Package index
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AgeC14_Computation() - Bayesian analysis for C-14 age estimations of various samples
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AgeS - Output of
AgeS_Computationfunction for the samples: "GDB5" and "GDB3" -
AgeS_Computation() - Bayesian analysis for OSL age estimation of various samples
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Age_Computation() - Bayesian analysis for the OSL age estimation of one sample
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Age_OSLC14() - Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples
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Catalhoyuk - Example Data for Bayesian Age Model
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Compute_AgeS_D() - Bayesian Models for Age Estimation with Priors from ModelAgePrior Dataset
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Compute_AgeS_DC14() - Bayesian Models for Age Estimation with Priors from Model_DC14 Dataset
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DATA1 - DATA of sample named GDB3
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DATA2 - DATA on sample named GDB5
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DATA3 - DATA of sample named FER1
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DATA_C14 - C14 cal age estiamte and its error
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Generate_DataFile() - Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED)
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Generate_DataFile_MG() - Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED)
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IntCal13 - Atmospheric North data for calibration of 14C age
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IntCal20 - Atmospheric North data for calibration of 14C age
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IsotonicCurve() - Compute Isotonic Regression for different stratigraphic constraints
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LT_RegenDose() - Plots Lx/Tx as a function of the regenerative dose (DEPRECATED)
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MCMCsample - MCMC sample from the posterior distribution of the dataset GDB5
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Marine13 - Marine data for calibration of 14C age
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Marine20 - Marine data for calibration of 14C age
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ModelAgePrior - JAGS Models for OSL Age Estimation in
Compute_AgeS_D -
ModelC14 - Likelihood of C14 samples for JAGS models use in
Age_OSLC14 -
ModelOSL - Likelihood of OSL samples for JAGS models use in
Age_OSLC14 -
ModelPrior - Prior for JAGS models use in
Age_OSLC14 -
Model_Age - JAGS models use in
Age_Computation -
Model_AgeC14 - JAGS models use in
AgeC14_Computation -
Model_AgeS - JAGS models use in
AgeS_Computation -
Model_DC14 - JAGS Models for OSL Age Estimation in
Compute_AgeS_DC14 -
Model_Palaeodose - JAGS models use in
Palaeodose_Computation -
OSLJingbian - Example Data for OSL Bayesian Age Model
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Palaeodose_Computation() - Bayesian analysis for the palaeodose estimation of various samples
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PlotIsotonicCurve() - Plot graphs build to vizualise isotonic distorsion of the function
IsotonicCurve(). The user needs to note that only one HPD regions / Credible Interval level can be allowed and vizualized. -
SCMatrix() - Construct the Stratigraphic Constrain Matrix Interactively
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SC_Ordered() - Create Stratigraphically Ordered Sample Matrix
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SHCal13 - Atmospheric South data for calibration of 14C age
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SHCal20 - Atmospheric South data for calibration of 14C age
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combine_DataFiles()Concat_DataFile() - Combine objects
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create_DataFile() - Prepare input data for subsequent BayLum Analysis
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create_FolderTemplates() - Create Folder Templates
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create_MeasuresDataFrame() - Create Input for Age Computation
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create_ThetaMatrix() - Create Theta Matrix
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create_diagnostic_plots() - Create MCMC diagnostic plots for AgeS_Computation / Compute_Ages functions
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display_diagnostic_plots() - Display diagnostic plots
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extract_Jags_model() - Extract and View Bayesian Models in BayLum
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findbounds() - Bounds for each age according to the stratigraphic constraints
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initialize_SC() - Initialization of the Gibbs Algorithm according to the fixed stratigraphy
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network_vizualization() - Plot a Graph Network according to sugiyama layout
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plotHpd() - Compute High Posterior Density (HPD) Interval
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plot_Ages() - Create Age Plot
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plot_MCMC() - Plot MCMC trajectories and posterior distributions
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plot_RegDosePoints() - Plot Regeneration Dose Points
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plot_Scatterplots()ScatterSamples() - Display Scatter Plot Matrix of the Bayesian Age Results
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remove_transitive_edges() - The Edge Pruner Algorithm (EPA). This algorithm handles the redundancy of the constraints matrix (see
create_ThetaMatrix()) by deleting all unecessary edges. The result is -
save_diagnostic_plots() - Save diagnostic plots to PDF
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write_BayLumFiles() - Write BayLum .csv-files
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write_YAMLConfigFile() - Write Auto Generated YAML BayLum Configuration File to the Disc